coverageMatrixPerSite: Coverage Matrix per Site
In mumichae/DASSIE: Detection of Alternative Transcription Start Sites
Description
Generates a matrix with per-base counts around a specific TSS or PAS for all samples
Usage
1
coverageMatrixPerSite(cvg_list, regions, gene, feature = "TSS", window = 500)
Arguments
cvg_list
a named list of coverage Rle's
regions
data.table containing the feature regions, must contain a column "site"
gene
name of gene
feature
type of feature: "TSS" or "PAS"
window
number of positions upstream and downstream of feature site
strand
either "+" or "-"
mumichae/DASSIE documentation built on Jan. 10, 2020, 12:07 a.m.
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Description
Generates a matrix with per-base counts around a specific TSS or PAS for all samples
Usage
1 | coverageMatrixPerSite(cvg_list, regions, gene, feature = "TSS", window = 500)
|
Arguments
cvg_list |
a named list of coverage Rle's |
regions |
data.table containing the feature regions, must contain a column "site" |
gene |
name of gene |
feature |
type of feature: "TSS" or "PAS" |
window |
number of positions upstream and downstream of feature site |
strand |
either "+" or "-" |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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