getDassieRegions: Extract regions around TSS and PAS and returns a GRanges...
In mumichae/DASSIE: Detection of Alternative Transcription Start Sites
Description
Convenience function for TSS and PAS regions of same length
Usage
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getDassieRegions(
exon_dt,
tssWindow = 500,
pasWindow = 1000,
tx_id = "tx_id",
remove_redundant = TRUE
)
Arguments
exon_dt
data.table convertible into GRanges, and contain a transcript
column that is specified in tx_id. Data must be strand-specific.
window
number of bp that the regions should have
mumichae/DASSIE documentation built on Jan. 10, 2020, 12:07 a.m.
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Description
Convenience function for TSS and PAS regions of same length
Usage
1 2 3 4 5 6 7 | getDassieRegions(
exon_dt,
tssWindow = 500,
pasWindow = 1000,
tx_id = "tx_id",
remove_redundant = TRUE
)
|
Arguments
exon_dt |
data.table convertible into GRanges, and contain a transcript column that is specified in tx_id. Data must be strand-specific. |
window |
number of bp that the regions should have |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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