plotPerSiteCoverageHeatmap: Coverage Heatmap per site

In mumichae/DASSIE: Detection of Alternative Transcription Start Sites

Description

Visualise coverage across all samples for a given gene name

Usage

plotPerSiteCoverageHeatmap(
  cvg_matrix,
  regions,
  gene,
  feature = "TSS",
  window = 500,
  log = T
)

Arguments

cvg_matrix	matrix to be plotted (created by coverMatrixPerSite)
regions	data.table containing the feature regions, must contain a column "site"
gene	gene name
feature	type of feature: "TSS" or "PAS"
window	number of positions upstream and downstream of feature site
log	log representation of counts
strand	either "+" or "-"

mumichae/DASSIE documentation built on Jan. 10, 2020, 12:07 a.m.