barcode_plot: barcode_plot
In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.
Description
Usage
Arguments
Value
Description
Create GSEA barcode plot from a chosen pathway.
Usage
1
barcode_plot(pathway, gsea_pathways, gsea_vector, gsea_results)
Arguments
pathway
the chosen pathway to plot.
gsea_pathways
your list of pathways used for GSEA.
gsea_vector
the ranked vector you used for GSEA with your human gene names and logFC.
gsea_results
your GSEA results dataframe.
Value
A nice looking barcode plot for your chosen pathway with gene ranks.
mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Create GSEA barcode plot from a chosen pathway.
Usage
1 | barcode_plot(pathway, gsea_pathways, gsea_vector, gsea_results)
|
Arguments
pathway |
the chosen pathway to plot. |
gsea_pathways |
your list of pathways used for GSEA. |
gsea_vector |
the ranked vector you used for GSEA with your human gene names and logFC. |
gsea_results |
your GSEA results dataframe. |
Value
A nice looking barcode plot for your chosen pathway with gene ranks.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.