nice_dim_plot: nice_dim_plot

In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.

Description

nicer looking version of the Seurat function DimPlot.

Usage

nice_dim_plot(
  seurat_obj,
  group_by = NULL,
  cols = NULL,
  pt_size = 1.3,
  label = T,
  reduction = "umap",
  dims_plot = 1:2
)

Arguments

seurat_obj	Seurat object.
group_by	what to colour the points by, usually a column in the Seurat object metadata.
cols	optional: colours to label the grouped points by.
pt_size	point size.
label	label groups with text on plot?
reduction	either "umap" or "pca".
dims_plot	dimensions to plot.

Value

UMAP or PCA plot.

mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.