convert_motif_targets_human: convert_motif_targets_human
In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.
Description
Usage
Arguments
Value
View source: R/convert_motif_targets_human.R
Description
convert the genelist from HOMER, i.e genes enriched in a particular motif, to a ranked vector for GSEA, using the original FindMarkers results and adding human gene names. * Improved version!
Usage
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3
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5
convert_motif_targets_human(
motif_genes,
expression_data,
create_ranked_vector = T
)
Arguments
motif_genes
character vector with the list of genes enriched in your motif of interest.
expression_data
FindMarkers results used to create original genelist for HOMER.
create_ranked_vector
default = T, create ranked vector to use with fgsea?
Value
ranked vector or dataframe with converted human genes.
mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.
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Description Usage Arguments Value
View source: R/convert_motif_targets_human.R
Description
convert the genelist from HOMER, i.e genes enriched in a particular motif, to a ranked vector for GSEA, using the original FindMarkers results and adding human gene names. * Improved version!
Usage
1 2 3 4 5 | convert_motif_targets_human(
motif_genes,
expression_data,
create_ranked_vector = T
)
|
Arguments
motif_genes |
character vector with the list of genes enriched in your motif of interest. |
expression_data |
FindMarkers results used to create original genelist for HOMER. |
create_ranked_vector |
default = T, create ranked vector to use with fgsea? |
Value
ranked vector or dataframe with converted human genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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