convert_FindMarkers_human_old: convert_FindMarkers_human_old

In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.

Description

convert the output of the Seurat function FindMarkers from fish genes to human.

Usage

convert_FindMarkers_human_old(
  fish_genelist,
  create_ranked_vector = T,
  remove_ribosomal_genes = T
)

Arguments

fish_genelist	FindMarkers results dataframe.
create_ranked_vector	if T, will convert the output into a ranked vector with human genes as name and avg_logFC as values, to use for GSEA.
remove_ribosomal_genes	if T, will remove anything starting with rps or rpl from the gene list

Value

if create_ranked_vector = T, a ranked vector with human genes as name and avg_logFC as values, to use for GSEA. if F, a dataframe.

mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.