convert_FindMarkers_human: convert_FindMarkers_human

In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.

Description

convert the results of FindMarkers (dataframe) to human genes and create ranked vector for GSEA. * Improved version!

Usage

convert_FindMarkers_human(
  genelist,
  remove_ribosomal_genes = T,
  create_ranked_vector = T
)

Arguments

genelist	FindMarkers output dataframe. Needs to have a column with the gene names called "gene" to proceed with this function.
remove_ribosomal_genes	default = T, remove ribosomal genes from FindMarkers results?
create_ranked_vector	default = T, create ranked vector to use with fgsea?

Value

ranked vector or dataframe with converted human genes.

mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.