vlnplot_compare_ST_SC: vlnplot_compare_ST_SC

In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.

Description

nicer looking version of the Seurat function VlnPlot, to compare expression of gene(s) in scRNA-seq and ST datasets.

Usage

vlnplot_compare_ST_SC(
  SC_obj,
  ST_obj,
  features,
  pt_size = 0.3,
  sort = T,
  plot_hline = T
)

Arguments

SC_obj	single cell Seurat object.
ST_obj	ST Seurat object.
features	gene(s) you want to plot expression of.
pt_size	point size.
sort	sort X-axis in descending order of mean expression?
plot_hline	plot a dashed horizontal line at 0?
dims_plot	dimensions to plot.

Value

violin plots.

mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.