create_HOMER_genelist: create_HOMER_genelist
In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.
Description
Usage
Arguments
Value
View source: R/create_HOMER_genelist.R
Description
Create txt file of genes with ENSEMBL IDs to be used for HOMER.
Usage
1
create_HOMER_genelist(genelist, save_as, remove_ribosomal_genes = T)
Arguments
genelist
List of genes you want to perform HOMER on. Must include "gene" and "avg_logFC" columns.
save_as
name that HOMER txt file will be saved as, don't have to include txt at end.
remove_ribosomal_genes
default = T, remove ribosomal genes from FindMarkers results?
Value
doesn't return anything into R, just saves txt file in the working directory.
mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.
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Description Usage Arguments Value
View source: R/create_HOMER_genelist.R
Description
Create txt file of genes with ENSEMBL IDs to be used for HOMER.
Usage
1 | create_HOMER_genelist(genelist, save_as, remove_ribosomal_genes = T)
|
Arguments
genelist |
List of genes you want to perform HOMER on. Must include "gene" and "avg_logFC" columns. |
save_as |
name that HOMER txt file will be saved as, don't have to include txt at end. |
remove_ribosomal_genes |
default = T, remove ribosomal genes from FindMarkers results? |
Value
doesn't return anything into R, just saves txt file in the working directory.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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