gsea_waterfall_plot: gsea_waterfall_plot

In mvhunter1/mvhspatialplots: Some improved functions for analysis of ST and GSEA data.

Description

double waterfall plot of the chosen top and bottom pathways by NES from GSEA. Optional labelling of pathways of interest.

Usage

gsea_waterfall_plot(
  gsea_results,
  pathways_to_highlight,
  labels_for_plot = NULL,
  n_terms = 250
)

Arguments

gsea_results	your GSEA results dataframe, should have one column called "pathway" and another called "NES", additional columns are fine too.
pathways_to_highlight	a character vector with the exact names of the pathways you want highlighted on your waterfall plot in red circles.
labels_for_plot	optional: a character vector with the exact names of the pathways you want labelled as text on your plot.
n_terms	the number of terms to be plotted.

Value

double waterfall plot.

mvhunter1/mvhspatialplots documentation built on April 24, 2021, 10:52 a.m.