asymmRerootingMethod: Calculates ancestral likelihoods of ancestral states for...
In nclark-lab/RERconverge: Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences
asymmRerootingMethod R Documentation
Calculates ancestral likelihoods of ancestral states for discrete characters
Description
Calculates ancestral likelihoods of ancestral states for discrete characters
Usage
asymmRerootingMethod(tree, tips, Q)
Arguments
tree
An object of class "phylo"
tips
The phenotype data for the species at the tips of the tree. Must be in the same order as tree$tip.label
Q
A transition rate matrix fit on the tree and tips
Value
A matrix of ancestral likelihoods with rows in the same order as the internal nodes in the tree
nclark-lab/RERconverge documentation built on March 2, 2024, 8:51 a.m.
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| asymmRerootingMethod | R Documentation |
Calculates ancestral likelihoods of ancestral states for discrete characters
Description
Calculates ancestral likelihoods of ancestral states for discrete characters
Usage
asymmRerootingMethod(tree, tips, Q)
Arguments
tree |
An object of class "phylo" |
tips |
The phenotype data for the species at the tips of the tree. Must be in the same order as tree$tip.label |
Q |
A transition rate matrix fit on the tree and tips |
Value
A matrix of ancestral likelihoods with rows in the same order as the internal nodes in the tree
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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