getEnrichPerms: Performs enrichment statistic permulations using existing...
In nclark-lab/RERconverge: Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences
View source: R/PermulationFuncs.R
getEnrichPerms R Documentation
Performs enrichment statistic permulations using existing gene correlation permulations
Description
Performs enrichment statistic permulations using existing gene correlation permulations
Usage
getEnrichPerms(corperms, realenrich, annotlist)
Arguments
corperms
Gene correlation permulations from getPermsContinuous
realenrich
Pathway enrichment results using observed phenotype obtained from 'correlateWithContinuousPhenotype' or 'correlateWithBinaryPhenotype'
annotlist
Pathway annotations
Value
Full null permulation statistics and p-values for gene correlations and pathway enrichment
nclark-lab/RERconverge documentation built on March 2, 2024, 8:51 a.m.
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View source: R/PermulationFuncs.R
| getEnrichPerms | R Documentation |
Performs enrichment statistic permulations using existing gene correlation permulations
Description
Performs enrichment statistic permulations using existing gene correlation permulations
Usage
getEnrichPerms(corperms, realenrich, annotlist)
Arguments
corperms |
Gene correlation permulations from |
realenrich |
Pathway enrichment results using observed phenotype obtained from 'correlateWithContinuousPhenotype' or 'correlateWithBinaryPhenotype' |
annotlist |
Pathway annotations |
Value
Full null permulation statistics and p-values for gene correlations and pathway enrichment
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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