View source: R/PermulationFuncs.R
foreground2TreeClades | R Documentation |
Generates a binary phenotype tree using the list of tip foreground animals, foreground common ancestors, and their phylogenetic relationships
foreground2TreeClades(
fg_vec,
sisters_list = NULL,
trees,
plotTree = T,
useSpecies = NULL
)
fg_vec |
A vector containing the tip foreground species |
sisters_list |
A list containing pairs of "sister species" in the foreground set (put NULL if empty) |
trees |
treesObj from |
plotTree |
A boolean indicator for plotting the output tree (default=FALSE) |
useSpecies |
An array containing the tip labels in the output tree |
fg.tree A binary phenotype tree corresponding to the input information
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