calculatePermulatedPaths_apply: Calculates the paths for all permulated trees for a list of...

In nclark-lab/RERconverge: Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

Calculates the paths for all permulated trees for a list of genes

Description

Calculates the paths for all permulated trees for a list of genes

Usage

calculatePermulatedPaths_apply(permulated.trees.list, map.list, treesObj)

Arguments

permulated.trees.list	A nested list of permulated phenotype trees for all the genes. The top layer lists the genes, and the nested layer lists the permulated binary trees (phylo objects) for each gene
map.list	A list of maps corresponding to the genes listed in permulated.trees.list, the output of matchAllNodesClades
treesObj	treesObj from readTrees

Value

permulated.paths.list A nested list of permulated paths corresponding to the nested list of permulated phenotype trees

nclark-lab/RERconverge documentation built on Feb. 4, 2025, 8:38 a.m.