correlateWithBinaryPhenotype | R Documentation |
getAllResiduals
and a phenotype paths vector for a binary phenotype made with tree2Paths
Computes the association statistics between RER from getAllResiduals
and a phenotype paths vector for a binary phenotype made with tree2Paths
correlateWithBinaryPhenotype(
RERmat,
charP,
min.sp = 10,
min.pos = 2,
weighted = "auto"
)
RERmat |
RER matrix returned by |
charP |
phenotype vector returned by |
min.sp |
Minimum number of species that must be present for a gene |
min.pos |
Minimum number of species that must be present in the foreground (non-zero phenotype values) |
weighted |
perform weighted correlation. This option turns on weighted correlation that uses the weights computed by |
method |
Method used to compute correlations. Accepts the same arguments as |
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