Man pages for nclark-lab/RERconverge
Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

char2Pathsturns a named vector of characters into a paths vector to be...
click_select_foreground_branchesInteractive click-based function to select foreground...
correlateWithBinaryPhenotypeComputes the association statistics between RER from...
correlateWithContinuousPhenotypeComputes the association statistics between RER from...
edgeVarsmaps a vector of traits onto a reference tree
fastwilcoxGMTallPerforms Wilcoxon Rank-Sum pathway enrichment on pathway...
foreground2PathsCreates paths from a set of foreground species
foreground2TreeCreates a binary trait tree from a set of foreground species.
getAllCorComputes the association statistics between RER from...
getAllResidualsmain RER computation function
getStatCalculates Rho-signed negative log-base-ten p-value for use...
makeBinaryPathsMakes a binary path vector from either a tree of class...
namePathsWSpeciesProvides names for paths/RERs representing terminal branches...
plotRersPlot the residuals reflecting the relative evolutionary rates...
plotTreeHighlightBranchesPlot the provided tree, (optionally) rerooted, with specified...
pruneTreewrapper around 'drop.tip'
read.gmtReads pathway data from a gmt-formatted file from GSEA-MSigDB
readTreesreads trees from a 2 column , tab seperated, file The first...
RERconvergeRERconverge
tree2PathsGenerate a phenotype paths vector from a phenotype tree
nclark-lab/RERconverge documentation built on Oct. 24, 2018, 9:07 a.m.