|char2Paths||turns a named vector of characters into a paths vector to be...|
|correlateWithBinaryPhenotype||Computes the association statistics between RER from...|
|correlateWithContinuousPhenotype||Computes the association statistics between RER from...|
|edgeVars||maps a vector of traits onto a reference tree|
|foreground2Paths||Obtain a trees object where the foreground species have...|
|foreground2Tree||Creates a tree form a set of foreground species|
|getAllCor||Computes the association statistics between RER from...|
|getAllResiduals||main RER computation function|
|makeBinaryPaths||Makes a binary path vector from either a tree of class...|
|plotRers||Plot the residuals reflecting the relative evolutionary rates...|
|pruneTree||wrapper around 'drop.tip'|
|readTrees||reads trees from a 2 column , tab seperated, file The first...|
|tree2Paths||Generate a phenotype paths vector from a phenotype tree|
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