char2Paths | turns a named vector of characters into a paths vector to be... |

correlateWithBinaryPhenotype | Computes the association statistics between RER from... |

correlateWithContinuousPhenotype | Computes the association statistics between RER from... |

edgeVars | maps a vector of traits onto a reference tree |

foreground2Paths | Obtain a trees object where the foreground species have... |

foreground2Tree | Creates a tree form a set of foreground species |

getAllCor | Computes the association statistics between RER from... |

getAllResiduals | main RER computation function |

makeBinaryPaths | Makes a binary path vector from either a tree of class... |

plotRers | Plot the residuals reflecting the relative evolutionary rates... |

pruneTree | wrapper around 'drop.tip' |

readTrees | reads trees from a 2 column , tab seperated, file The first... |

tree2Paths | Generate a phenotype paths vector from a phenotype tree |

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