View source: R/PermulationFuncs.R
simBinPhenoCC | R Documentation |
Produces one CC binary permulation for a gene
simBinPhenoCC(
trees,
mastertree,
root_sp,
fg_vec,
sisters_list = NULL,
pathvec,
plotTreeBool = F
)
trees |
treesObj from |
mastertree |
A rooted, fully dichotomous tree derived from the treesObj master tree from |
root_sp |
The species to root the tree on |
fg_vec |
a vector containing the foreground species |
sisters_list |
A list containing pairs of "sister species" in the foreground set (put NULL if empty) |
pathvec |
A path vector generated from the real set of foreground animals |
plotTreeBool |
Boolean indicator for plotting the output tree (default=FALSE) |
A CC binary permulated tree
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