simBinPhenoRank: Produces one binary permulation based on ranking of simulated...

In nclark-lab/RERconverge: Analysis of Convergence Between Organismal Traits and DNA/Protein Sequences

Produces one binary permulation based on ranking of simulated branch lengths

Description

Produces one binary permulation based on ranking of simulated branch lengths

Usage

simBinPhenoRank(trees, root_sp, fg_vec, sisters_list = NULL, plotTreeBool = F)

Arguments

trees	treesObj from readTrees
root_sp	The species to root the tree on
fg_vec	a vector containing the foreground species
sisters_list	A list containing pairs of "sister species" in the foreground set (put NULL if empty)
plotTreeBool	Boolean indicator for plotting the output tree (default=FALSE)

Value

A binary permulated tree

nclark-lab/RERconverge documentation built on March 2, 2024, 8:51 a.m.