add_publications_from_file: Add a batch of publications from spreadsheet

In nf-osi/nfportalutils: NF Portal Utilities

Add a batch of publications from spreadsheet

Description

Add a batch of publications from spreadsheet

Usage

add_publications_from_file(
  file,
  publication_table_id,
  study_table_id,
  list_sep = "|",
  dry_run = TRUE
)

Arguments

file	Spreadsheet (.csv/.tsv) with pubs to add should have pmid, studyId, diseaseFocus, manifestation. pmid is one per row and unique, rest can be list_sep vals.
publication_table_id	Synapse id of the portal publication table. Must have write access.
study_table_id	Synapse id of the portal study table. Need read access.
list_sep	Delimiter character used to separate list columns.
dry_run	Default = TRUE. Skips upload to table and instead prints formatted publication metadata.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.