annotate_aligned_reads: Annotate processed aligned reads

In nf-osi/nfportalutils: NF Portal Utilities

Annotate processed aligned reads

Description

Given a manifest, annotate data as aligned reads data. Returns a "partial" manifest, which can be adjusted as needed, e.g. add additional comments or batch info.

Usage

annotate_aligned_reads(
  metadata,
  workflow_link,
  genomic_reference = "GRCh38",
  verbose = TRUE
)

Arguments

metadata	Metadata table to build upon.
workflow_link	Workflow link to most specific part of workflow generating these data.
genomic_reference	For aligned reads, genomic reference meta should be present; defaults to GRCh38.
verbose	Give verbose reports for what's happening.

nf-osi/nfportalutils documentation built on June 10, 2025, 5:08 a.m.