annotation_rule: Match to output-specific annotation function
In nf-osi/nfportalutils: NF Portal Utilities
View source: R/nextflow_annotation_utils.R
annotation_rule R Documentation
Match to output-specific annotation function
Description
This encodes logic for annotation and checks, e.g.
DeepVariant is Germline variant calling only, Mutect2 is for Somatic variant calling only,
while FreeBayes and Strelka2 can be applied to both; see
https://raw.githubusercontent.com/nf-core/sarek/3.4.2//docs/images/sarek_workflow.png
Usage
annotation_rule(outputFrom, which = c("format_as", "annotate_as", "template"))
nf-osi/nfportalutils documentation built on June 10, 2025, 5:08 a.m.
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View source: R/nextflow_annotation_utils.R
| annotation_rule | R Documentation |
Match to output-specific annotation function
Description
This encodes logic for annotation and checks, e.g. DeepVariant is Germline variant calling only, Mutect2 is for Somatic variant calling only, while FreeBayes and Strelka2 can be applied to both; see https://raw.githubusercontent.com/nf-core/sarek/3.4.2//docs/images/sarek_workflow.png
Usage
annotation_rule(outputFrom, which = c("format_as", "annotate_as", "template"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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