annotate_with_manifest: Set annotations from a manifest

In nf-osi/nfportalutils: NF Portal Utilities

Set annotations from a manifest

Description

The Synapse docs suggest doing batch annotations through a fileview. However, it is often simpler to modify or set new annotations directly given a table of just the entities (rows) and props (cols) we want. This is like how schematic works, except without any validation (so works best for power-users who know the data model well). Some desired defaults are taken into account, such as not submitting key-values with NA and empty strings.

Usage

annotate_with_manifest(
  manifest,
  ignore_na = TRUE,
  ignore_blank = TRUE,
  verbose = FALSE
)

Arguments

manifest	A table manifest. Needs to contain entityId.
ignore_na	Whether to ignore annotations that are NA; default TRUE.
ignore_blank	Whether to ignore annotations that are that empty strings; default TRUE.
verbose	Be chatty, default FALSE.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.