cbp_add_maf: Export and add mutations data to cBioPortal dataset
In nf-osi/nfportalutils: NF Portal Utilities
cbp_add_maf R Documentation
Export and add mutations data to cBioPortal dataset
Description
This should be run in an existing dataset package root.
Usage
cbp_add_maf(maf_data, verbose = TRUE)
Arguments
maf_data
Synapse id of merged maf file for public release.
verbose
Whether to be chatty.
Details
Get merged maf file that represents filtered subset of mafs containing only (non-germline) data OK to release publicly.
This needs to be packaged with other files like this
example of a public mutations dataset.
nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.
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| cbp_add_maf | R Documentation |
Export and add mutations data to cBioPortal dataset
Description
This should be run in an existing dataset package root.
Usage
cbp_add_maf(maf_data, verbose = TRUE)
Arguments
maf_data |
Synapse id of |
verbose |
Whether to be chatty. |
Details
Get merged maf file that represents filtered subset of mafs containing only (non-germline) data OK to release publicly.
This needs to be packaged with other files like this
example of a public mutations dataset.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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