API for nf-osi/nfportalutils
NF Portal Utilities
| Global functions | |
|---|---|
| %>% | Man page |
| .add_publication_from_pubmed | Man page Source code |
| .check_login | Man page Source code |
| .delim_string_to_vector | Man page Source code |
| .modify_annotation | Man page Source code |
| .onLoad | Source code |
| .replace_string_column_with_stringlist_column | Man page Source code |
| .store_rows | Man page Source code |
| .update_table_data | Man page Source code |
| .update_view_data | Man page |
| add_activity | Man page Source code |
| add_activity_batch | Man page Source code |
| add_default_fileview | Man page Source code |
| add_default_folders | Man page Source code |
| add_default_wiki | Man page Source code |
| add_new_study_meta | Man page Source code |
| add_people_from_table | Man page Source code |
| add_publication_from_pubmed | Man page |
| add_publication_from_unpaywall | Man page Source code |
| add_publications_from_file | Man page Source code |
| add_study_summary | Man page Source code |
| add_to_collection | Man page |
| add_to_scope | Man page Source code |
| adjust_list_length | Man page Source code |
| adjust_string_size | Man page Source code |
| adjust_view | Man page Source code |
| annotate_aligned_reads | Man page |
| annotate_called_variants | Man page |
| annotate_cnv | Man page |
| annotate_expression | Man page |
| annotate_reports_sarek | Man page Source code |
| annotate_with_manifest | Man page Source code |
| annotate_with_tool_stats | Man page |
| append_kv | Man page Source code |
| as_coll_items | Man page Source code |
| as_mmd_link | Man page Source code |
| as_mmd_node | Man page Source code |
| as_table_schema | Man page Source code |
| assign_study_data_types | Man page Source code |
| bad_url | Man page Source code |
| bare_syn_id | Man page Source code |
| bipartite_mmd_template | Man page Source code |
| button_widget | Man page Source code |
| byte_budget | Man page Source code |
| calc_study_dist_dtm | Man page Source code |
| calculate_related_studies | Man page Source code |
| cbp_add_clinical | Man page Source code |
| cbp_add_cna | Man page Source code |
| cbp_add_expression | Man page Source code |
| cbp_add_maf | Man page Source code |
| cbp_datatypes | Man page Source code |
| cbp_new_cancer_type | Man page Source code |
| cbp_new_study | Man page Source code |
| check_access | Man page |
| check_byte_budget_col_swap | Man page Source code |
| check_cbp_study_id | Man page Source code |
| check_readpair_validity | Man page Source code |
| check_wiki_links | Man page Source code |
| checked_message | Man page Source code |
| cite_dataset | Man page Source code |
| convert_to_stringlist | Man page Source code |
| copy | Man page Source code |
| copy_annotations | Man page Source code |
| data_curator_app_subpage | Man page Source code |
| delete_provenance | Man page Source code |
| derive_annotations | Man page |
| dsp_dataset_mapping | Man page Source code |
| dt_read | Man page Source code |
| error | Source code |
| find_child | Man page Source code |
| find_child_type | Man page Source code |
| find_data_root | Man page Source code |
| find_in | Man page Source code |
| find_nf_asset | Man page Source code |
| format_gene_expression_data | Man page Source code |
| from_pubmed | Man page Source code |
| gather_annotations | Man page Source code |
| get_by_prop_from_json_schema | Man page Source code |
| get_cbio_filename | Man page Source code |
| get_dependency_from_json_schema | Man page Source code |
| get_doi_meta | Man page Source code |
| get_project_wiki | Man page Source code |
| get_valid_values_from_json_schema | Man page Source code |
| grant_specific_file_access | Man page |
| identify_read_pair | Man page Source code |
| infer_data_type | Man page Source code |
| is_dataset | Man page |
| is_dataset_collection | Man page |
| is_file | Man page |
| is_valid_syn_id | Man page Source code |
| is_valid_team | Man page Source code |
| is_valid_user | Man page Source code |
| key_label_to_id | Man page Source code |
| latest_version | Man page |
| list_project_datasets | Man page Source code |
| make_admin | Man page Source code |
| make_cbio_clinical_header | Man page Source code |
| make_folder | Man page Source code |
| make_meta_clinical_generic | Man page Source code |
| make_meta_cna | Man page Source code |
| make_meta_expression | Man page Source code |
| make_meta_genomic_generic | Man page Source code |
| make_meta_maf | Man page Source code |
| make_meta_patient | Man page Source code |
| make_meta_sample | Man page Source code |
| make_meta_study_generic | Man page Source code |
| make_public | Man page |
| make_public_viewable | Man page |
| manifest_generate | Man page Source code |
| manifest_passed | Man page Source code |
| manifest_validate | Man page Source code |
| map_reports_sarek | Man page Source code |
| map_sample_input_ss | Man page Source code |
| map_sample_io | Man page |
| map_sample_output_rnaseq | Man page |
| map_sample_output_sarek | Man page |
| match_col | Man page Source code |
| meta_qc_dataset | Man page Source code |
| meta_qc_project | Man page Source code |
| missing_annotation_email | Man page Source code |
| new_col | Man page Source code |
| new_dataset | Man page |
| new_project | Man page Source code |
| new_project_strict | Man page Source code |
| new_view | Man page Source code |
| nf_cnv_dataset | Man page |
| nf_sarek_datasets | Man page |
| nf_star_salmon_datasets | Man page |
| nf_workflow_version | Man page Source code |
| ppp_mmd_template | Man page Source code |
| precheck_manifest | Man page Source code |
| processing_flowchart | Man page Source code |
| register_study | Man page Source code |
| register_study_files | Man page Source code |
| remanifest | Man page Source code |
| remove_button | Man page Source code |
| remove_wiki_subpage | Man page Source code |
| save_manifest | Man page Source code |
| schema_max_str_len | Man page Source code |
| strlist_JSON | Man page Source code |
| summarize_attribute | Man page Source code |
| summarize_file_access | Man page Source code |
| swap_col | Man page Source code |
| syn_login | Man page Source code |
| table_query | Man page Source code |
| tersely | Man page Source code |
| test_failed | Man page Source code |
| test_passed | Man page Source code |
| update_items | Man page Source code |
| update_study_annotations | Man page Source code |
| use_latest_in_collection | Man page |
| use_ref_map | Man page Source code |
| walk | Man page Source code |
| which_coll_type | Man page |
| wiki_mod | Man page Source code |
| write_cbio_clinical | Man page Source code |
| write_meta | Man page Source code |
