make_meta_maf: Make meta file for maf

In nf-osi/nfportalutils: NF Portal Utilities

Make meta file for maf

Description

Reused from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/make_meta.R#L157

Usage

make_meta_maf(
  cancer_study_identifier,
  data_filename = "data_mutations.txt",
  publish_dir = ".",
  write = TRUE,
  verbose = TRUE
)

Arguments

cancer_study_identifier	The study identifier.
data_filename	Name of the data file. Defaults to "data_mutations.txt".
publish_dir	Directory path to write to, defaults to current.
write	Whether to write the meta file for the data file.
verbose	Report where file has been written.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.