annotate_called_variants: Annotate somatic or germline variants output
In nf-osi/nfportalutils: NF Portal Utilities
annotate_called_variants R Documentation
Annotate somatic or germline variants output
Description
Given a manifest, annotate data as variant data (vcf or maf).
Usage
annotate_called_variants(metadata, workflow_link, verbose = TRUE)
Arguments
metadata
Metadata table to build upon.
workflow_link
Workflow link to most specific part of workflow generating these data.
verbose
Give verbose reports for what's happening.
Details
maf files use the same template but with different default values.
If in the future mafs require a significantly different template,
then this should be factored out into a separate annotation function.
nf-osi/nfportalutils documentation built on June 10, 2025, 5:08 a.m.
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| annotate_called_variants | R Documentation |
Annotate somatic or germline variants output
Description
Given a manifest, annotate data as variant data (vcf or maf).
Usage
annotate_called_variants(metadata, workflow_link, verbose = TRUE)
Arguments
metadata |
Metadata table to build upon. |
workflow_link |
Workflow link to most specific part of workflow generating these data. |
verbose |
Give verbose reports for what's happening. |
Details
maf files use the same template but with different default values.
If in the future mafs require a significantly different template,
then this should be factored out into a separate annotation function.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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