map_sample_io: Map sample input-output

In nf-osi/nfportalutils: NF Portal Utilities

Map sample input-output

Description

Wrapper to map sample inputs and outputs depending on workflow type.

Usage

map_sample_io(
  workflow = c("nf-rnaseq", "nf-sarek"),
  samplesheet,
  syn_out,
  sample_level = 2
)

Arguments

workflow	Workflow.
samplesheet	A local file or syn id of samplesheet.
syn_out	Syn id of syn output destination with files of interest.
sample_level	If caller is organized by sample, use 2 (default), if samples organized by caller, use 3. See details.

Value

A table with sample level output_id output_name input_id.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.