missing_annotation_email: Convert a delimited string to a stringlist annotation

In nf-osi/nfportalutils: NF Portal Utilities

Convert a delimited string to a stringlist annotation

Description

Converts a delimited string to a stringlist annotation and adjust the associated schema in the portal fileview.

Usage

missing_annotation_email(
  fileview_id,
  annotation_key,
  created_date,
  dry_run = TRUE
)

Arguments

fileview_id	The synapse id of a fileview. Must have the desired annotations in the schema, and must have the files to annotate included in the scope. Must have write access to the files you want to re-annotate.
annotation_key	A character string of the annotation you'd like to use to detect unannotated files.
created_date	The date ('DD/MM/YYYY') to cut off
dry_run	Default = TRUE. Skips emailing and instead prints summary tibble.

Value

If dry_run == T, returns study tibble and skips upload.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.