make_meta_clinical_generic: Generic template for clinical data file
In nf-osi/nfportalutils: NF Portal Utilities

make_meta_clinical_generic

R Documentation

Generic template for clinical data file

Description

Make meta file to describe one of the clinical data files (e.g. SAMPLE, PATIENT). Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/make_meta.R#L65

Usage

make_meta_clinical_generic(
  cancer_study_identifier,
  genetic_alteration_type,
  datatype,
  data_filename
)

Arguments

`cancer_study_identifier`	The study identifier.
`genetic_alteration_type`	The cBioPortal generic alteration type.
`datatype`	The cBioPortal data type of `data_filename`.
`data_filename`	Name of the data file that this meta file describes.