nf_star_salmon_datasets: Create dataset for STAR-Salmon expression quantification...

In nf-osi/nfportalutils: NF Portal Utilities

Create dataset for STAR-Salmon expression quantification results

Description

With a level-3 manifest that is created from annotate_expression, calls new_dataset to make quantification files (.sf) into dataset. Uses latest version of the files and creates a "Draft" dataset. See nf_sarek_datasets.

Usage

nf_star_salmon_datasets(manifest, parent, dry_run = TRUE)

Arguments

manifest	A table of annotated data manifest from annotate_expression.
parent	Synapse id of parent project where the dataset will live.
dry_run	If TRUE, don't actually store dataset, just return the data object for inspection or further modification.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.