annotate_cnv: Annotate CNV outputs from CNVKit

In nf-osi/nfportalutils: NF Portal Utilities

Annotate CNV outputs from CNVKit

Description

Annotate CNV outputs from CNVKit

Usage

annotate_cnv(
  output_dataset,
  input_dataset,
  workflow = "CNVkit",
  workflowLink = "https://nf-co.re/sarek/3.1/docs/output#cnvkit",
  dry_run = TRUE
)

Arguments

output_dataset	Id of dataset, which should be created first via nf_cnv_dataset.
input_dataset	Input dataset used in the workflow.
workflow	Optional name for workflow, defaults to CNVkit.
workflowLink	Optional corresponding link to workflow, defaults to known used version.
dry_run	Whether to return a version submit manifest.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.