annotate_expression: Annotate processed expression output

In nf-osi/nfportalutils: NF Portal Utilities

Annotate processed expression output

Description

Annotate processed expression output

Usage

annotate_expression(
  sample_io,
  template = "bts:ProcessedExpressionTemplate",
  schema =
    "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/main/NF.jsonld",
  verbose = TRUE,
  dry_run = TRUE
)

Arguments

sample_io	Table mapping input to outputs, where outputs are expected to be .sf files.
template	(Optional) URI of template in data model to use, prefixed if needed. Can specify different model/version, but in some cases may not work well.
schema	Path (URL or local) to file from which schema will be read, or schema as list object.
verbose	Give verbose reports for what's happening.
dry_run	Whether to apply annotations.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.