make_meta_patient: Make patient meta file

In nf-osi/nfportalutils: NF Portal Utilities

Make patient meta file

Description

Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/create_meta.R#L101

Usage

make_meta_patient(
  cancer_study_identifier,
  data_filename = "data_clinical_patient.txt",
  write = TRUE,
  publish_dir = ".",
  verbose = TRUE
)

Arguments

cancer_study_identifier	The study identifier.
data_filename	Name of the data file that this meta file describes.
write	Whether to write the meta file for the clinical data file.
publish_dir	Directory path to write to, defaults to current.
verbose	Report where file has been written.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.