make_cbio_clinical_header: Make header for cBioPortal clinical data file
In nf-osi/nfportalutils: NF Portal Utilities
make_cbio_clinical_header R Documentation
Make header for cBioPortal clinical data file
Description
This is called from the wrapper write_cbio_clinical.
Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/create_clinical.R#L396.
Needs a data table of clinical data and a reference providing label, description, and data_type.
Usage
make_cbio_clinical_header(df, mapping)
Arguments
df
A data.frame representing clinical dataset to publicize.
mapping
A reference table providing label, description, and data_type for each source attribute in df.
nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.
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| make_cbio_clinical_header | R Documentation |
Make header for cBioPortal clinical data file
Description
This is called from the wrapper write_cbio_clinical.
Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/create_clinical.R#L396.
Needs a data table of clinical data and a reference providing label, description, and data_type.
Usage
make_cbio_clinical_header(df, mapping)
Arguments
df |
A |
mapping |
A reference table providing |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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