map_sample_output_rnaseq: Map sample to output from nf-rnaseq
In nf-osi/nfportalutils: NF Portal Utilities
map_sample_output_rnaseq R Documentation
Map sample to output from nf-rnaseq
Description
See https://nf-co.re/rnaseq. Given location where workflow has deposited the outputs,
map relevant processed files based on extensions and link these files to source samples.
So for results/star_salmon/<sample>/<file>, the URI to pass in is the star_salmon folder.
Warning: Reliance on certain file structure and naming convention can make this somewhat brittle!
Usage
map_sample_output_rnaseq(syn_out)
Arguments
syn_out
Syn id of syn output destination with files of interest.
Details
See the related map_sample_input_ss for mapping sample to inputs instead of outputs.
Value
A data.table with cols output_name output_id sample workflow
nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.
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| map_sample_output_rnaseq | R Documentation |
Map sample to output from nf-rnaseq
Description
See https://nf-co.re/rnaseq. Given location where workflow has deposited the outputs,
map relevant processed files based on extensions and link these files to source samples.
So for results/star_salmon/<sample>/<file>, the URI to pass in is the star_salmon folder.
Warning: Reliance on certain file structure and naming convention can make this somewhat brittle!
Usage
map_sample_output_rnaseq(syn_out)
Arguments
syn_out |
Syn id of syn output destination with files of interest. |
Details
See the related map_sample_input_ss for mapping sample to inputs instead of outputs.
Value
A data.table with cols output_name output_id sample workflow
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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