meta_qc_project: QC metadata at the project level with pass/fail result

In nf-osi/nfportalutils: NF Portal Utilities

QC metadata at the project level with pass/fail result

Description

An adequate wrapper to go through project datasets and do basic QC in one-stop-shop manner for projects that have standard structure corresponding to what DCA expects.

Usage

meta_qc_project(project_id, result_file = NULL, ...)

Arguments

project_id	Synapse project id.
result_file	If not NULL, also write to output to .csv file.
...	Params passed to meta_qc_dataset.

Details

For selective validation or other (e.g. milestone-based) structures, look at meta_qc_dataset.

Value

A table of with rows for the datasets QC'd, with dataset id, name, TRUE/FALSE pass result, and summary; otherwise NA.

nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.