make_meta_genomic_generic | R Documentation |
Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/make_meta.R#L65
Internal workhorse union of all the properties used for a genomic-type data file –
the sensible defaults/specific combination should be passed in by a higher-level fun, e.g. make_meta_maf
.
make_meta_genomic_generic(
cancer_study_identifier,
genetic_alteration_type,
datatype,
stable_id = NULL,
reference_genome_id = NULL,
profile_name = NULL,
profile_description = NULL,
data_filename
)
cancer_study_identifier |
The study identifier. |
genetic_alteration_type |
The cBioPortal generic alteration type. |
datatype |
The cBioPortal data type of |
stable_id |
Stable id. |
reference_genome_id |
Reference genome id, e.g. 'hg19'. |
profile_name |
Name of the genomic profiling. This is set by the more specific |
profile_description |
Brief description for the genomic profiling.
This is set by the more specific |
data_filename |
Name of the data file that this meta file describes. |
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