get_cbio_filename: Get cBioPortal clinical file name based on clinical data type
In nf-osi/nfportalutils: NF Portal Utilities
get_cbio_filename R Documentation
Get cBioPortal clinical file name based on clinical data type
Description
This is called from the wrapper write_cbio_clinical.
Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/create_clinical.R#L411.
Note that of the clinical file types, the PATIENT type can actually be optional,
and we (NF) currently don't use the TIMELINE type, so options have been simplified.
Usage
get_cbio_filename(clinical_type = c("SAMPLE", "PATIENT"))
Arguments
clinical_type
String representing cBioPortal clinical data type.
Value
string
nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.
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| get_cbio_filename | R Documentation |
Get cBioPortal clinical file name based on clinical data type
Description
This is called from the wrapper write_cbio_clinical.
Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/create_clinical.R#L411.
Note that of the clinical file types, the PATIENT type can actually be optional,
and we (NF) currently don't use the TIMELINE type, so options have been simplified.
Usage
get_cbio_filename(clinical_type = c("SAMPLE", "PATIENT"))
Arguments
clinical_type |
String representing cBioPortal clinical data type. |
Value
string
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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