get_cbio_filename | R Documentation |
This is called from the wrapper write_cbio_clinical
.
Adapted from https://github.com/Sage-Bionetworks/genie-erbb2-cbio/blob/develop/create_clinical.R#L411.
Note that of the clinical file types, the PATIENT type can actually be optional,
and we (NF) currently don't use the TIMELINE type, so options have been simplified.
get_cbio_filename(clinical_type = c("SAMPLE", "PATIENT"))
clinical_type |
String representing cBioPortal clinical data type. |
string
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