derive_annotations | R Documentation |
A processed or derived file can inherit annotations from the input file(s). Currently, this generously facilitates inheritance of many properties except ones that "obviously" shouldn't be inherited, such as "fileFormat" or "comments". These rules are hard-coded and might need to be expanded as the data model changes, and the manifest generated should still be reviewed.
derive_annotations(sample_io, template, schema, format, verbose = TRUE)
format |
File format of the processed data, e.g. "vcf". |
If multiple inputs given, this will inherit annotations from the FIRST input.
Files that pass through this naturally have dataSubtype
automatically set to "processed" and fileFormat
set
to the actual new file format. In the future, template
itself may define default format
so we don't need to specify explicitly.
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