make_meta_cna: Make meta file for cBioPortal copy number alteration data
In nf-osi/nfportalutils: NF Portal Utilities
make_meta_cna R Documentation
Make meta file for cBioPortal copy number alteration data
Description
Currently assumes seg data and should be extended later.
Usage
make_meta_cna(
cancer_study_identifier,
data_filename = "data_cna.seg",
reference_genome_id = "hg19",
publish_dir = ".",
write = TRUE,
verbose = TRUE
)
Details
See https://docs.cbioportal.org/file-formats/#segmented-data
nf-osi/nfportalutils documentation built on Feb. 26, 2024, 1:05 p.m.
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| make_meta_cna | R Documentation |
Make meta file for cBioPortal copy number alteration data
Description
Currently assumes seg data and should be extended later.
Usage
make_meta_cna(
cancer_study_identifier,
data_filename = "data_cna.seg",
reference_genome_id = "hg19",
publish_dir = ".",
write = TRUE,
verbose = TRUE
)
Details
See https://docs.cbioportal.org/file-formats/#segmented-data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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