plot_varlenage: Plot variability of length at age

In nwfsc-assess/nwfscSurvey: Northwest Fisheries Science Center Survey

Plot variability of length at age

Description

Plots the SD and CV of age at observed and predicted length

Usage

plot_varlenage(
  dir = NULL,
  dat,
  main = NULL,
  Par = data.frame(K = 0.13, Linf = 55, L0 = 15, CV0 = 0.1, CV1 = 0.1),
  bySex = TRUE,
  estVB = TRUE,
  bins = NULL,
  legX = "bottomleft",
  legY = NULL,
  dopng = lifecycle::deprecated(),
  ...
)

Arguments

dir	Directory to save output.
dat	The data loaded from the NWFSC database
main	Name that will be used to name the saved png
Par	Starting parameters for K, Linf, L0, CV0, and CV2 based on the Stock Synthesis parameterization of von Bertanlaffy growth.
bySex	Logical to indicate if plot by sex
estVB	Logical. Estimate vonB growth to plot against predicted length. If F, it uses the paramters in parStart.
bins	The bins to put ages into. If NULL then simply uses the ages as recorded.
legX	legend location for x axis, defaults to "bottomleft"
legY	legend location for y axis, defaults to NULL
dopng	Deprecated with nwfscSurvey 2.1 because providing a non-NULL value to dir can serve the same purpose as dopng = TRUE without the potential for errors when dopng = TRUE and dir = NULL. Thus, users no longer have to specify dopng to save the plot as a png.
...	Additional arguments for the plots.

Author(s)

Chantel Wetzel

nwfsc-assess/nwfscSurvey documentation built on April 29, 2024, 9:51 p.m.