Man pages for nwfsc-assess/nwfscSurvey
Northwest Fisheries Science Center Survey

createStrataDF.fnFunction that is able to create strata data frame and will...
DesignBasedEstBiomass.EWC.fnCalculates design based estimates from survey data for early...
GetAgesExcel.fnWrapper function that will read in age comp file and create...
GetAges.fnWrapper function that will read in age comp file and create...
GetLFs.fnGet length frequencies
GetLFsFromExcel.fnGet length frequencies from an Excel file
getNCalculate effN input sample sizes based on Stewart & Hamel...
GetTotalBiomassExcel.fnWrapper function to create the designed based indices
GetTotalBiomass.fnWrapper function to create the designed based indices
old documentation files/Bio.fnPlots the biomass with confidence intervals
old documentation files/createStrataDF.fncreate a strata file for EWC functions
old documentation files/DesignBasedEstBiomass.EWC.fnCalculate yearly biomass estimates
old documentation files/GetAgesExcel.fnReads in age data from Excel file and returns age frequencies...
old documentation files/GetAges.fnReads in age data and returns age frequencies in SS3 format
old documentation files/GetLFs.fnGet length frequencies
old documentation files/GetLFsFromExcel.fnReads in LF data and returns length frequencies in SS3 format
old documentation files/GetTotalBiomassExcel.fnOutput the biomass in SS3 format, reading in from Excel file
old documentation files/GetTotalBiomass.fnOutput the biomass in SS3 format, reading in from a csv file
old documentation files/nwfscSurveyCode-packageFunctions used to analyze NWFSC survey data and create input...
old documentation files/plotBio.fnPlot the biomass estimates with confidence interval
old documentation files/plotBioStrata.fnPlot biomass estimates by strata with CI's
old documentation files/plotFreqData.fnPlot age or length frequencies as bubble plots
old documentation files/plotFreqDataStrata.fnPlot age or length frequencies by strata as bubble plots
old documentation files/plotLFs.fnPlots frequency data (deprecated) and now should use...
old documentation files/plotSexRatio.fnPlots the sex ratio by length bins
old documentation files/readDataFromExcel.fnRead biomass data from Excel file
old documentation files/readInAgeComps.fnReads in age comps from a csv file provided by survey team
old documentation files/ReadInAges.EWC.fnReads in the West Coast Trienial survey data and filters the...
old documentation files/ReadInBiomass.EWC.fnRead in the csv file of biomass observations
old documentation files/readInBiomass.fnRead in the biomass estimates from csv file provided by...
old documentation files/readInExcelAgeComps.fnReads age comps from Excel file provided by survey team
old documentation files/readInExcelBiomass.fnRead biomass from Excel file provided by survey team
old documentation files/readInExcelLengthComps.fnRead in length comps from Excel file provided by survey team
old documentation files/readInLengthComps.fnRead in length comps from a csv file
old documentation files/ReadInLengths.EWC.fnRead in length data for the Early West Coast surveys.
old documentation files/SA3Area of lat and depth boundaries
old documentation files/SS3AF.fnWrapper function to create age frequency data in format for...
old documentation files/SS3AgeAtLen.fnCalculates age-at-length to input into SS3
old documentation files/SS3Biomass.fnCalculates yearly biomass for input into SS3
old documentation files/SS3LF.fnCalculates length frequencies for input into SS3
old documentation files/SS3LFstrata.fnEnumerates the length frequencies by strata
old documentation files/StrataAreas.fnDetermine strata area.
old documentation files/strataBiomass.fnEnumerates biomass by strata
old documentation files/StrataFactors.fnStrata factors by name
old documentation files/SurveyAgeAtLen.EWC.fnCalculate and format age-at-length compositions
old documentation files/SurveyLFs.EWC.fnCalculate length frequency compositions
old documentation files/updateSurveyCodeUpdates nwfsc survey code by reading from R-forge Subversion...
old documentation files/varLengthAtAge.fnPlot variability of length at age
plotBio.fnPlots the biomass with confidence intervals
plotBioStrata.fnNot recommended for use yet Name would imply that it would...
plotFreqData.fnThis function plots frequency data as bubble plots You may...
plotFreqDataStrata.fnThis function plots frequency data as bubble plots when...
plotLFs.fnA wrapper for the plotFreqData because I originally called it...
plotSexRatio.fnFunction to plot sex ratio
readDataFromExcel.fnReads in the data from an Excel sheet the column names of the...
readInAgeComps.fnReads in the stratum numbers from the Excel file provided by...
ReadInAges.EWC.fnReads in the West Coast Trienial survey data and filters the...
ReadInBiomass.EWC.fnReads in the triennial survey data and filters the data into...
readInBiomass.fnReads in the stratum biomasses from the text file saved from...
readInExcelAgeComps.fnReads in the stratum numbers from the Excel file provided by...
readInExcelBiomass.fnReads in the stratum biomasses from the Excel file provided...
readInExcelLengthComps.fnReads in the stratum numbers from the Excel file provided by...
readInLengthComps.fnReads in the stratum numbers from a csv file (usually...
ReadInLengths.EWC.fnReads in the triennial survey data and filters the data into...
SS3AF.fnWrapper function to create age frequency data in format for...
SS3AgeAtLen.fnCalculates proportion of age at length and reformats into SS3...
SS3Biomass.fnThis function outputs a dataframe in the abundance index...
SS3LF.fnCalculates proportion at length and reformats into SS# format...
SS3LFstrata.fncalculates proportion at length and reformats into SS# format...
StrataAreas.fnDetermine strata area.
strataBiomass.fnThis function outputs a dataframe in the abundance index...
StrataFactors.fnCreates a vector of strata factors by name
SurveyAFs.EWC.fnEpands the lengths up to the total stratum area then sums...
SurveyAgeAtLen.EWC.fnCalculates proportion of age at length and reformats into SS...
SurveyLFs.EWC.fnEpands the lengths up to the total stratum area then sums...
varLengthAtAge.fnPlot variability of length at age
nwfsc-assess/nwfscSurvey documentation built on June 1, 2018, 1:31 a.m.