PullBio.fn: Pull biological data (age, length, weight) from the NWFSC...

In nwfsc-assess/nwfscSurvey: Northwest Fisheries Science Center Survey

Pull biological data (age, length, weight) from the NWFSC data warehouse The website is: https://www.webapps.nwfsc.noaa.gov/data This function can be used to pull a single species or all observed species In order to pull all species leave Name = NULL and SciName = NULL

Description

Pull biological data (age, length, weight) from the NWFSC data warehouse The website is: https://www.webapps.nwfsc.noaa.gov/data This function can be used to pull a single species or all observed species In order to pull all species leave Name = NULL and SciName = NULL

Usage

PullBio.fn(
  Name = NULL,
  SciName = NULL,
  YearRange = c(1980, 5000),
  SurveyName = NULL,
  SaveFile = lifecycle::deprecated(),
  Dir = NULL,
  verbose = TRUE
)

Arguments

Name	common name of species data to pull from the data warehouse
SciName	scientific name of species data to pull from the data warehouse
YearRange	range of years to pull data
SurveyName	survey to pull the data for the options are: Triennial, AFSC.Slope, NWFSC.Combo, NWFSC.Slope, NWFSC.Shelf, NWFSC.Hypoxia, NWFSC.Santa.Barb.Basin, NWFSC.Shelf.Rockfish (NWFSC.Hook.Line but both are not working), NWFSC.Video#'
SaveFile	Deprecated with nwfscSurvey 2.3. Output will be save automatically if the Dir input is specified.
Dir	The directory where you want the output file to be saved. The name of the file within Dir will start with Catch_ and end with .rdata. Default NULL which will not save an output file.
verbose	A logical that specifies if you want to print messages and warnings to the console. The default is TRUE.

Author(s)

Chantel Wetzel based on code by John Wallace

Examples

## Not run: 
# SurveyName is only arg that has to be specified
bio_dat <- PullBio.fn(SurveyName = "NWFSC.Combo")

# Example with specified common name
bio_dat <- PullBio.fn(
  Name = "vermilion rockfish",
  SurveyName = "NWFSC.Combo"
)

# Example with specified scientific name
bio_dat <- PullBio.fn(
  SciName = "Eopsetta jordani",
  SurveyName = "NWFSC.Combo"
)

# Example with multiple names
bio_dat <- PullBio.fn(
  SciName = c("Sebastes aurora", "Eopsetta jordani"),
  SurveyName = "NWFSC.Combo"
)

## End(Not run)

nwfsc-assess/nwfscSurvey documentation built on Nov. 12, 2024, 8:14 p.m.