PlotVarLengthAtAge.fn: Plot variability of length at age

In nwfsc-assess/nwfscSurvey: Northwest Fisheries Science Center Survey

Plot variability of length at age

Description

Plots the SD and CV of age at observed and predicted length

Usage

PlotVarLengthAtAge.fn(
  dir = NULL,
  dat,
  main = NULL,
  ageBin = 1,
  bySex = T,
  parStart = c(52, 0.09, 1),
  estVB = T,
  bins = NULL,
  legX = "bottomleft",
  legY = NULL,
  dopng = lifecycle::deprecated(),
  ...
)

Arguments

dir	Directory where output will be saved. The directory where the file should be saved. If dir = NULL no output will be saved.
dat	A data frame of length-composition data returned from pull_bio().
main	Name that will be used to name the saved png
ageBin	Currently fixed at 1, so a moot parameter
bySex	Logical to indicate if plot by sex
parStart	Vector of starting parameters for Linf, k, and t0 in VonB estimation
estVB	Logical. Estimate vonB growth to plot against predicted length. If F, it uses the paramters in parStart.
bins	The bins to put ages into. If NULL then simply uses the ages as recorded.
legX	legend location for x axis, defaults to "bottomleft"
legY	legend location for y axis, defaults to NULL
dopng	Deprecated with nwfscSurvey 2.1 because providing a non-NULL value to dir can serve the same purpose as dopng = TRUE without the potential for errors when dopng = TRUE and dir = NULL. Thus, users no longer have to specify dopng to save the plot as a png.
...	Additional arguments for the plots

Author(s)

Allan Hicks and Chantel Wetzel

nwfsc-assess/nwfscSurvey documentation built on Nov. 12, 2024, 8:14 p.m.