API for ohlerlab/RiboseQC
RiboseQC, a Comprehensive Ribo-Seq Analysis Tool
| Global functions | |
|---|---|
| FaFile_Circ | Man page |
| FaFile_Circ-class | Man page |
| RiboseQC_analysis | Man page Source code |
| calc_cutoffs_from_profiles | Man page Source code |
| choose_readlengths | Man page Source code |
| create_html_report | Man page Source code |
| create_pdfs_from_rds_objects | Man page Source code |
| generate_rdata_list | Man page Source code |
| getSeq,FaFile_Circ-method | Man page |
| get_codon_usage_data | Man page Source code |
| get_default_rl_selection | Man page Source code |
| get_metagene_data | Man page Source code |
| get_ps_fromsplicemin | Man page Source code |
| get_ps_fromspliceplus | Man page Source code |
| get_rl_and_cutoffs | Man page Source code |
| get_top50_all_genes | Man page Source code |
| get_top50_cds_genes | Man page Source code |
| get_top50_mapping | Man page Source code |
| load_annotation | Man page Source code |
| plot_codon_usage_bulk | Man page Source code |
| plot_codon_usage_bulk_rmd | Man page Source code |
| plot_codon_usage_positional | Man page Source code |
| plot_codon_usage_positional_rmd | Man page Source code |
| plot_frame_dist_boxplot | Man page Source code |
| plot_frame_dist_boxplot_rmd | Man page Source code |
| plot_metagene_bar | Man page Source code |
| plot_metagene_bar_rmd | Man page Source code |
| plot_metagene_hm | Man page Source code |
| plot_metagene_hm_rmd | Man page Source code |
| plot_read_biotype_dist_1 | Man page Source code |
| plot_read_biotype_dist_2 | Man page Source code |
| plot_read_biotype_dist_by_length | Man page Source code |
| plot_read_length_dist | Man page Source code |
| plot_read_length_dist_by_biotype | Man page Source code |
| prepare_annotation_files | Man page Source code |
| seqinfo,FaFile_Circ-method | Man page |
