plot_read_length_dist: Plot read length distribution

In ohlerlab/RiboseQC: RiboseQC, a Comprehensive Ribo-Seq Analysis Tool

Plot read length distribution

Description

This function plots the read length distribution per originating compartment for one input sample.

This plot is used in the Ribo-seQC report in section 2.

Usage

plot_read_length_dist(rld, sample, output_rds_path = "")

Arguments

rld	res_all$read_stats$rld generated by RiboseQC_analysis data.frame containing the number of reads per originating compartment (rows) and read lengths (columns).
sample	String; sample name (selected from the input names given in the input_sample_names parameter of create_html_report).
output_rds_path	String; full path to output folder for RDS object files created by this function. Defaults to NOT save RDS; to save RDS, provide path to destination folder.

Value

This function returns a plot that can be integrated in the html report and that can be saved as RDS object file.

Author(s)

Dominique Sydow, [e-mail]

See Also

create_html_report

ohlerlab/RiboseQC documentation built on Aug. 15, 2023, 7:30 a.m.