plot_frame_dist_boxplot_rmd: Plot frame coverage of 5'-site profiles within the RMarkdown...

In ohlerlab/RiboseQC: RiboseQC, a Comprehensive Ribo-Seq Analysis Tool

Plot frame coverage of 5'-site profiles within the RMarkdown document

Description

This function generates iteratively all frame coverage boxplots (iteration over originating compartments).

These plots are displayed in the Ribo-seQC report in section 4.2.1.

Usage

plot_frame_dist_boxplot_rmd(analysis_frame_cutoff, sample = "",
  output_rds_path = "")

Arguments

analysis_frame_cutoff	Object containing statistics on frame coverage (per originating compartment and read length) generated by RiboseQC_analysis. Example: res_all$selection_cutoffs$analysis_frame_cutoff
sample	String; sample name (selected from the input names given in the input_sample_names parameter of create_html_report).
output_rds_path	String; full path to output folder for RDS object files created by this function. Defaults to NOT save RDS; to save RDS, provide path to destination folder.

Value

This function integrates plots in the html report.

Author(s)

Dominique Sydow, [e-mail]

See Also

create_html_report

ohlerlab/RiboseQC documentation built on Aug. 15, 2023, 7:30 a.m.