seqinfo-FaFile_Circ-method: Yields a seqinfo object for the FaFile_Circ with it's...

In ohlerlab/RiboseQC: RiboseQC, a Comprehensive Ribo-Seq Analysis Tool

Yields a seqinfo object for the FaFile_Circ with it's circular ranges slot set appropriately

Description

Yields a seqinfo object for the FaFile_Circ with it's circular ranges slot set appropriately

Usage

## S4 method for signature 'FaFile_Circ'
seqinfo(x)

Arguments

x	FaFile_Circ; the object to get the seqinfo for

Value

A Seqinfo object

See Also

create_html_report

Examples

mytempfile=tempfile()
writeXStringSet(setNames(DNAStringSet(c('AAAAAAAAGG','AAAAAAAAGG')),
  c('chrM','chr2')),
  filepath=mytempfile)
Rsamtools::indexFa(mytempfile)
cREF<-FaFile_Circ(Rsamtools::FaFile(mytempfile),circularRanges='chrM')
seqinfo(cREF)

ohlerlab/RiboseQC documentation built on Aug. 15, 2023, 7:30 a.m.