API for ohlerlab/RiboseQC
Ribo-seQC, a comprehensive Ribo-seq analysis tool

Global functions
RiboseQC_analysis Man page Source code
calc_cutoffs_from_profiles Man page Source code
choose_readlengths Man page Source code
create_html_report Man page Source code
create_pdfs_from_rds_objects Man page Source code
generate_rdata_list Man page Source code
get_codon_usage_data Man page Source code
get_default_rl_selection Man page Source code
get_metagene_data Man page Source code
get_ps_fromsplicemin Man page Source code
get_ps_fromspliceplus Man page Source code
get_rl_and_cutoffs Man page Source code
get_top50_all_genes Man page Source code
get_top50_cds_genes Man page Source code
get_top50_mapping Man page Source code
load_annotation Man page Source code
plot_codon_usage_bulk Man page Source code
plot_codon_usage_bulk_rmd Man page Source code
plot_codon_usage_positional Man page Source code
plot_codon_usage_positional_rmd Man page Source code
plot_frame_dist_boxplot Man page Source code
plot_frame_dist_boxplot_rmd Man page Source code
plot_metagene_bar Man page Source code
plot_metagene_bar_rmd Man page Source code
plot_metagene_hm Man page Source code
plot_metagene_hm_rmd Man page Source code
plot_read_biotype_dist_1 Man page Source code
plot_read_biotype_dist_2 Man page Source code
plot_read_biotype_dist_by_length Man page Source code
plot_read_length_dist Man page Source code
plot_read_length_dist_by_biotype Man page Source code
prepare_annotation_files Man page Source code
ohlerlab/RiboseQC documentation built on March 23, 2019, 12:11 a.m.